rs29622093 SNP Detail

Summary

• ID
  rs29622093
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103625584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT TCACTATTTT AATATTTCCT
  M
  TTTTCACTAT TTAATAATTT AATAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45344555	mCV22332912	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss147139008	ENSMUSSNP7084319	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29622093					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103625584 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Caprin1	cell cycle associated protein 1			Intron
				Noncoding-Transcript-Variant
Cpgi11985	CpG island 11985			1040 bp proximal
Gm75184	predicted gene, 75184			1938 bp upstream
Gm75190	predicted gene, 75190			710 bp upstream
Rr373619	regulatory region 373619			69 bp upstream
Rr561931	regulatory region 561931			366 bp proximal
Rr561932	regulatory region 561932			1855 bp proximal
Tssr19172	transcription start site region 19172			709 bp upstream
Tssr19173	transcription start site region 19173			731 bp upstream
Tssr25500	transcription start site region 25500			1697 bp downstream
Tssr25501	transcription start site region 25501			1750 bp downstream