rs29619970 SNP Detail

Summary

• ID
  rs29619970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3682651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTTCTA TAATGTATAG
  ATATGAAAAC CTGCCCTATA AGTCCTCACT GTGCACAATG TTCATGTTGT AGTTGTTAAT
  TTTTTATTAA AACAATGTAA TTATAAAATA TGTATTTTAG GAGATGGAGA GACTGTTCAT
  TGGTTAAGAA CATTGCTCTT CAAGTAGAAC AAGGTTTGAT TCCCAGCACG CACATGGAGG
  Y
  TCTTAACCAT CTATAATTTT AGTCCCAAAG GATCTAACAC CCATTTCTAG TCTTCTCACT
  TTACATTCTT CATAAACAAT GTTATAATTT CAAAACCATC TCTGGTACTC AGGAAAATAT
  GAGATGTACC ACTTAACACC ACATCCTTTA ATCTGAAGAC TTCTCCAAAC TGCCCTAGGT
  CATTGTGTTA ACCTAAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49550006	NES12908829	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29619970					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49550006	NES12908829	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3682651 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	763 bp proximal