rs29619031 SNP Detail

Summary

• ID
  rs29619031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3683574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTCATT TCTATTTTAA
  GAGAGCAACG GAATGGGAGG GTGCTGGGGA GAAAGACAGA ATGTTGCTGG TATGATGTTT
  GCCTAGTACT CACTTCTGAT TTGCTCTGTC AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  ACTTTATCCC TAGCACTTTG GCACACATCT TATTTATAGT CAGTGAATTT GAAGCTTTTG
  Y
  TGTTTCAAAG GTCAATATTT ATTTATGACC GAAGATATAA ATGTTCCCTT TTTCTTTTTC
  TCCTTTTCTT CCATTCTTTC TTTCTGTTTC CTGCCATTTA TTCTCTTTCT TTGTTTCTGC
  CCTTTCTCCT TTCCTCCCTA CATCTCTCCT GTCTTCCCTC TTTTCTCATT CATTCCTAGC
  ACACAGCTTT TCTTCCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49549997	NES12908858	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	C
ss320633690	CHEV_3_3618514	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29619031					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49549997	NES12908858	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3683574 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	within coordinates