rs29617824 SNP Detail

Summary

• ID
  rs29617824
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99566054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC TTGCCTAGGT TCTGATCAAC
  K
  GCCAAGGCGT CTGGGTCCAC CATGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39099802	mCV23729248	ABI	CRAMUS_MOUSE	f	SNP		T					G		T
ss52684842	NES15534659	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T		G	T	T	T		T	T	G	T		T
ss145068570	ENSMUSSNP4130605	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss324503045	CHEV_13_100199501	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29617824					SNP	G	T	T	T	T	T	G	G	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684842	NES15534659	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99566054 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr4149	transcription start site region 4149	46 bp upstream
Tssr123696	transcription start site region 123696	345 bp downstream
Tssr123697	transcription start site region 123697	535 bp downstream
Tssr123698	transcription start site region 123698	666 bp downstream
Tssr123699	transcription start site region 123699	757 bp downstream
Tssr123700	transcription start site region 123700	782 bp downstream
Tssr123701	transcription start site region 123701	840 bp downstream
Tssr123702	transcription start site region 123702	860 bp downstream
Tssr123703	transcription start site region 123703	912 bp downstream
Tssr123704	transcription start site region 123704	963 bp downstream
Tssr123705	transcription start site region 123705	1271 bp downstream
Tssr123706	transcription start site region 123706	1489 bp downstream
Tssr123707	transcription start site region 123707	1678 bp downstream
Tssr123708	transcription start site region 123708	1886 bp downstream