rs29616973 SNP Detail

Summary

• ID
  rs29616973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101871653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC TGCTTTGATA AAATACCGAC
  R
  AAAGCAATTT AAGGAACAAA GGGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45344199	mCV25361169	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss147097897	ENSMUSSNP312641	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320433852	CHEV_2_101881465	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29616973					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101871653 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1627 bp downstream
Rr561618	regulatory region 561618	1669 bp distal
Rr561619	regulatory region 561619	1224 bp distal
Tssr19089	transcription start site region 19089	1711 bp downstream
Tssr19090	transcription start site region 19090	1672 bp downstream
Tssr19091	transcription start site region 19091	1649 bp downstream