rs29616538 SNP Detail

Summary

• ID
  rs29616538
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:6739749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACTCTC AAGGTTATAT
  TATAAGTACA AGTTAAACAT AAAGCCCATA TTTTGAGTAC TGGGAGGGAG TTATTCCTTT
  GGTAAAGTGC TCTCCAATCG AGAAGGTAAC ACACTCATAA AAAAGTCCCT CTTAATCCTT
  ATACTGGGGG GTGGGGTCAG TAGAGGATGT ATGGAATCTG GGGCAAACCA GTCAGCACCG
  W
  GTTACCTTAT CTCCCAAATT CATTTAGAAA TCTATAAATA AATACATGCC CAGCATGGAT
  ATGTAGGCTC CATGTGGGTT TGTTCACACC CCCACATAAG CATACACATA CACACAGCAT
  GTTTTACTAC AGTATGTGAT TTAGAATTTT ATTATTTTTG TTACATTATC AAATATTCAT
  ATATGTTTCA AACGACATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49551924	NES12903737	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29616538					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49551924	NES12903737	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:6739749 () rs orientation: forward

Symbol	Name	Function Class
Gm54187	predicted gene, 54187	within coordinates
Rr573216	regulatory region 573216	697 bp proximal