rs29615673 SNP Detail

Summary

• ID
  rs29615673
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:6742436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTAAAAC TTTGGAGCAT TTACTTGATC TACCTGACCT
  ATAGAAGAAA AAAGAATAAT CCACACATAT TTTCTCTGTA TGTTTTTATT ATGTTTTTCA
  W
  TCATATCCTC ACATATCTAT TTAACAATAA TAATAATGTT CATTAACATT TCTGATTTTT
  ATGAATGCTA CAGCATTTTC CATCTCTAAT CTAATGTCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45552610	mCV23348122	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					A		T
ss49551919	NES12903610	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T		T	T	A	T		T	A	A	T		T
ss134550410	ENSMUSSNP6424933	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							T
ss320639698	CHEV_3_6677376	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29615673					SNP	A	A	T	T	T	A	T	A	T	T	A	T	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49551919	NES12903610	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:6742436 () rs orientation: forward

Symbol	Name	Function Class
Gm54187	predicted gene, 54187	within coordinates
Rr573216	regulatory region 573216	1718 bp distal