rs29612678 SNP Detail

Summary

• ID
  rs29612678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29536547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGAATG TTAGGAAACA
  TGGGGCTGGG CCCTTGACCC AGGGTAGACG TGGAGCCCCC TGGGGCCATG AGGACTTGGT
  TGCTAGGGCT GGAGGAGACT GTCTACCATC TGCTTCTGGC TATCTTCATG CCCAGTTGGG
  TTGATCAGCC CTGCCACAAT TCTCCTTGTC CTGTCTCCCC TTTGCTTCCC AGGTGGTACC
  Y
  GTTGCAGCCC GGTTGCTGCT GGAGATGTTC TCAGGGGAGC TTTCTTGGTC GGCAGACAGC
  ATCCGACTGC AGATCTCAAA CCCGGATCTC AAAGACCACA TGGTAGAGCA GTTTAAAGAG
  CTTCATCACC TCTGGCAGTC CCAGCAGCAA TTGCAGCCCA TGGTCCAGGC CCCTCCTGTG
  GCAGGCCTCG ATGCAAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47863858	NES11697004	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29612678					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47863858	NES11697004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29536547 () rs orientation: forward

Symbol	Name	Function Class
Irf5	interferon regulatory factor 5	Coding-Synonymous
Rr627591	regulatory region 627591	298 bp proximal
Rr627592	regulatory region 627592	420 bp proximal
Tssr55278	transcription start site region 55278	1165 bp downstream
Tssr55279	transcription start site region 55279	484 bp downstream
Tssr55280	transcription start site region 55280	511 bp upstream