rs29612676 SNP Detail

Summary

• ID
  rs29612676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29535588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAGCCCCC ACATGTTGCC TTGTAAGGAC CTTGACAGGC
  CAGGCGGGTT GCCAGGGCAG AGTCGTGGGG ATGGGGCAGG GTTGCACGGG AGGAGGATGG
  Y
  GAAGAAAATA AGCCTTTAGG CCAGTCTTCC TGGGTCAAGG CTGAACTGGG GAGGCTGGGG
  AAGTTGGGCC TACCACCCGG CTGCTGAGTA GCTGTGAGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47863856	NES11697002	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29612676					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47863856	NES11697002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29535588 () rs orientation: forward

Symbol	Name	Function Class
Irf5	interferon regulatory factor 5	Intron
Rr627591	regulatory region 627591	1257 bp proximal
Rr627592	regulatory region 627592	1379 bp proximal
Tssr55276	transcription start site region 55276	1564 bp downstream
Tssr55277	transcription start site region 55277	1501 bp downstream
Tssr55278	transcription start site region 55278	206 bp downstream
Tssr55279	transcription start site region 55279	439 bp upstream
Tssr55280	transcription start site region 55280	1470 bp upstream