rs29610092 SNP Detail

Summary

• ID
  rs29610092
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108320960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCACAT ACTGCCGCTC
  GAGTTTGTAG TCTAGCGGTA AGGCAAGGGA GACCAGTCCA CCACCACTTT GGCTGGTGAT
  AGAGAAGCGG TTGCGGGTGT TGCCGCTGGT GATCTGGTAG GTAATGACAC TGTGAGCGTC
  TCGATCCACG GCTGACACGG TCACCACACT GGTGCCCACG GCGGCGTCCT CGTTGAGCCG
  M
  ACGGTGTACT CTGGCTGCGT GAAGGTTGGG TTGTTGTCAT TGACGTCCAG GATGGTTACA
  CTGACACTGG CTGAGGCCGT GAGCGCTGGG GTGCCATGGT CCCGGGCCTC TACACCAAAG
  CTGTAGAAAT CAACCTCTTC CCGATCCAAC TCTGCGGCCA CAGAGATCCA GCCTGTGCCA
  TTGTTAATGG TGAAGGGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46864720	NES10697089	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610092					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864720	NES10697089	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108320960 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celsr2	cadherin, EGF LAG seven-pass G-type receptor 2			Coding-Synonymous
				Intron
Cpgi13701	CpG island 13701			1262 bp proximal
Rr407079	regulatory region 407079			1144 bp distal
Rr583231	regulatory region 583231			1799 bp proximal