rs29609928 SNP Detail

Summary

• ID
  rs29609928
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108293527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGGCAG AGGCAGCCGA
  ATCTCTGAGT TTGAGGCCAG CCTGATCTAC AGAGTGAGTT CCAGGACAGC CAGGGCTACA
  CAGAGAGACC CTGCTTTGAA AGAGGGGGGA GGAGGAAGGA AGGAAAGAAG GAAGGAAGGT
  AGGTAGGTAG GTAGATCTTG CTGGCTGATA TCTTCCTTAT AGGTTCTAGA CAACGCCCTA
  M
  CTACTATCTC CTCTCCTTAA GGCAGCAGAA CACAGACTGC CTCCACTCTG GTCTTTTTTT
  TCCTTCCTTG TTCTGTTTCA GGAATCACCC ACTTGCAATC TGTTCCCTGC ATCCAAAAGC
  CCGGGGCGCT CTCCTCTTGC ACAACCAATT CTTCCACCTC GGCGGAAAAC TGGGTTCGGT
  GCCCGGACAA CAGCAAGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46864416	NES10697788	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29609928					SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864416	NES10697788	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108293527 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psrc1	proline/serine-rich coiled-coil 1			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr375556	regulatory region 375556			674 bp downstream
Rr583225	regulatory region 583225			1652 bp distal