rs29609925 SNP Detail

Summary

• ID
  rs29609925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108293506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCCATTA ATCCCAGCAC
  TCTAGAGGCA GAGGCAGCCG AATCTCTGAG TTTGAGGCCA GCCTGATCTA CAGAGTGAGT
  TCCAGGACAG CCAGGGCTAC ACAGAGAGAC CCTGCTTTGA AAGAGGGGGG AGGAGGAAGG
  AAGGAAAGAA GGAAGGAAGG TAGGTAGGTA GGTAGATCTT GCTGGCTGAT ATCTTCCTTA
  Y
  AGGTTCTAGA CAACGCCCTA CCTACTATCT CCTCTCCTTA AGGCAGCAGA ACACAGACTG
  CCTCCACTCT GGTCTTTTTT TTCCTTCCTT GTTCTGTTTC AGGAATCACC CACTTGCAAT
  CTGTTCCCTG CATCCAAAAG CCCGGGGCGC TCTCCTCTTG CACAACCAAT TCTTCCACCT
  CGGCGGAAAA CTGGGTTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46864413	NES10697785	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29609925					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864413	NES10697785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108293506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psrc1	proline/serine-rich coiled-coil 1			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr375556	regulatory region 375556			653 bp downstream
Rr583225	regulatory region 583225			1631 bp distal