rs29609562 SNP Detail

Summary

• ID
  rs29609562
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:50519132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCCGTG TGGACTAGTT
  GGTTGGTGGC TTAATCCCTG AGACCTTGAT GTCTTGATAG TTAGACCTTG ATAATCAGTC
  TCAGAAATGA GTCAGGAATA AGGAAATAAG CACACTGTGT ATAAGAGCGC GTTCTGTGAC
  AGCATGGAAA TGCGTGCTCA TCCCAAACCC AATGTCATGT CAGATCCATT GGTCTGAGCA
  W
  CTGCAATGTG TCTGCAAAGT GCGATCCCAC AGGAAAATGG GAGGCAGAGA CCAGAGAATC
  CCTAGGAGCT CACAGCCCAG CTACAGTGGC CAGGAGTCTA AAAACAAGAC AGAAGATAAG
  GATCAGCACC CGAGGCTGTT CTCTGAGGTC CACAAGTGTT CTCACACATA CTCTCTCTGT
  GTCTCTGTCT GTGTCTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48367921	NES12236985	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609562					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48367921	NES12236985	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:50519132 () rs orientation: forward

Symbol	Name	Function Class
D17Mit216	DNA segment, Chr 17, Massachusetts Institute of Technology 216	616 bp distal
Gm9191	predicted gene 9191	647 bp downstream
Gm37173	predicted gene, 37173	within coordinates