rs29609559 SNP Detail

Summary

• ID
  rs29609559
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:50519564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTATACCT ATATCTATCT
  ATTTTTATCA CACACACACA CACTATTACG AAATAAAGAA GTAGGGAGAG GGTCAGGGAA
  GAGGCGGCAT GCACATCAGG AAACTGTACG CCTGTCAAGG TGAGCTTATG TTTTACTGGT
  CAGAATCATG TAGCCTGGTC CTTCCATCTG CACTGTGTCC AAGAAGGTGT GAGAATGAGG
  S
  TTCTGCCAGT CCGACCCATA GAAGTTGCAT CATTTTCTCA AATACACACC TACACACCCA
  TGAACAGGGT GTGGACAGAT ACTTTCCAAA GCTCGCATTC CAGTAATATA TAGACCACTT
  GTCTCAGATT CAGTTTTCCC AGCCAACTAA CCATTCATGG TTGATTCTTT TATTGCGCGC
  AGGTTGGTGG GGTGGGGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48367918	NES12236887	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29609559					SNP	G	G	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48367918	NES12236887	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:50519564 () rs orientation: forward

Symbol	Name	Function Class
Gm9191	predicted gene 9191	215 bp downstream
Gm37173	predicted gene, 37173	within coordinates