rs29609556 SNP Detail

Summary

• ID
  rs29609556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:50519897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCCCAG CCAACTAACC
  ATTCATGGTT GATTCTTTTA TTGCGCGCAG GTTGGTGGGG TGGGGGGATT GTTCTCAACA
  GATGCTTTGG TGGATAAGGC TACTTTTAAC TACACTGGTT TTTTTCCTGC TCCCGCCGAA
  GGGCAGGGTC CAGCTCAAAG CGGTACCACA ACCGTAGTCT CATTGGCTGT GGCTCCATCC
  R
  GACTCATTGT AAGACTCAGG ACCCAGGCCG TGTGACTCTT GAGCTCAGCC GCCTTGGCCA
  TGGTTGGGTA CTTCCAAATA ACCAGCTGGT TCTGGGCAAA GCCCTGACCT GAGATTCGCT
  CCTTATAGTG GGGAGAGCAG AGGACGGAGC ACACGCAGAA ATGCACATTC ACAGCACTTA
  GACAGGCCCC AGAGCAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48367914	NES12236892	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29609556					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48367914	NES12236892	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:50519897 () rs orientation: forward

Symbol	Name	Function Class
D17Mit216	DNA segment, Chr 17, Massachusetts Institute of Technology 216	1381 bp distal
Gm9191	predicted gene 9191	within coordinates
Gm37173	predicted gene, 37173	within coordinates