rs29609555 SNP Detail

Summary

• ID
  rs29609555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:50519935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGCGCGC AGGTTGGTGG
  GGTGGGGGGA TTGTTCTCAA CAGATGCTTT GGTGGATAAG GCTACTTTTA ACTACACTGG
  TTTTTTTCCT GCTCCCGCCG AAGGGCAGGG TCCAGCTCAA AGCGGTACCA CAACCGTAGT
  CTCATTGGCT GTGGCTCCAT CCAGACTCAT TGTAAGACTC AGGACCCAGG CCGTGTGACT
  Y
  TTGAGCTCAG CCGCCTTGGC CATGGTTGGG TACTTCCAAA TAACCAGCTG GTTCTGGGCA
  AAGCCCTGAC CTGAGATTCG CTCCTTATAG TGGGGAGAGC AGAGGACGGA GCACACGCAG
  AAATGCACAT TCACAGCACT TAGACAGGCC CCAGAGCAGT TCCAAATGTG AATGTGTCAC
  TCACTGATAC CTCCTCCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48367913	NES12236893	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29609555					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48367913	NES12236893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:50519935 () rs orientation: forward

Symbol	Name	Function Class
D17Mit216	DNA segment, Chr 17, Massachusetts Institute of Technology 216	1419 bp distal
Gm9191	predicted gene 9191	within coordinates
Gm37173	predicted gene, 37173	within coordinates