rs29609372 SNP Detail

Summary

• ID
  rs29609372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29245338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTTTT TCTCTTTTCT
  TTCTGTTTTT TTTTTTTCCA GTTGTCCCTT GAACTAATAC TAATCCCCCT GCCTCAATTT
  CTTAATGCTG GCATTACAGG TCTGCCCCAC CAAACTTGGG GCAGGGGGAA ACCAGCAGCA
  ACAACAAAAC CTTAGCAGCT GAGCCCCTCC ATGGGTCAAG AACCTCTGCT TTGTGTGGCC
  R
  GTGCCTAAGG GCACCTGCAT CCGGAACAGT CTGAGCCCCA CCCTCATTTC CAAGGCTGAC
  ATACCAAGGC ACACCTTCTC AGTAGTCAGA TGGTCCCAGC CAGCATCCTA GCTACAGTAC
  TAGTCTGAGT CTTAGTTGTC AAATGTTCTC ACTATGACAT GCTTTGGATT CCAGTGGCCT
  TAATGAGAAA GTCAGAGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47862216	NES11679037	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29609372					SNP	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862216	NES11679037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29245338 () rs orientation: forward

Symbol	Name	Function Class
Rr627532	regulatory region 627532	22 bp proximal
Rr627533	regulatory region 627533	1320 bp proximal
Rr627534	regulatory region 627534	1831 bp proximal
Tssr55216	transcription start site region 55216	695 bp upstream
Tssr55217	transcription start site region 55217	836 bp upstream
Tssr60081	transcription start site region 60081	450 bp downstream