rs29609371 SNP Detail

Summary

• ID
  rs29609371
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29244667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGTAGG TAAAGCCACT
  TGCCGAGCCT GACAACCTGA GGTCTATGCC CACACCCCAA GTGGTAGAAG AAAGAATGAA
  GATGTGTTAT CTTCTGACCT CCACAAATGC TCTGTAACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACGTAT AATTTAAAAA GAACAACTAA ACATGAGAGC ATTGCCAGAA
  S
  AAAAATAGTG ATTTAAAAAT GATGATGTTG GGTGGAGAGC CCTGGCTGCC CTTCCAGAGG
  TCCTGAGTTC AATTCCCCGT GACCATATGG TGGCTCATAA CTCTATAATG GGATCTGGTG
  CCCGCTTCTG GCACGCAGGT GTACATATAG ATAAAGCACT CATGCATTAA ATAAATAAAT
  CTTAAAAGAA AAAAAAACGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47862214	NES11679107	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609371					SNP	C	C	C	C	C	C	G	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862214	NES11679107	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29244667 () rs orientation: forward

Symbol	Name	Function Class
Rr627532	regulatory region 627532	693 bp proximal
Rr627533	regulatory region 627533	1991 bp proximal
Tssr55216	transcription start site region 55216	1366 bp upstream
Tssr55217	transcription start site region 55217	1507 bp upstream
Tssr60081	transcription start site region 60081	1121 bp downstream