rs29609370 SNP Detail

Summary

• ID
  rs29609370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29244646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGGTGG TGGATGGAAT
  GACTCAGTAG GTAAAGCCAC TTGCCGAGCC TGACAACCTG AGGTCTATGC CCACACCCCA
  AGTGGTAGAA GAAAGAATGA AGATGTGTTA TCTTCTGACC TCCACAAATG CTCTGTAACA
  CACACACACA CACACACACA CACACACACA CACACACGTA TAATTTAAAA AGAACAACTA
  R
  ACATGAGAGC ATTGCCAGAA CAAAAATAGT GATTTAAAAA TGATGATGTT GGGTGGAGAG
  CCCTGGCTGC CCTTCCAGAG GTCCTGAGTT CAATTCCCCG TGACCATATG GTGGCTCATA
  ACTCTATAAT GGGATCTGGT GCCCGCTTCT GGCACGCAGG TGTACATATA GATAAAGCAC
  TCATGCATTA AATAAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47862212	NES11679105	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609370					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862212	NES11679105	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29244646 () rs orientation: forward

Symbol	Name	Function Class
Rr627532	regulatory region 627532	714 bp proximal
Tssr55216	transcription start site region 55216	1387 bp upstream
Tssr55217	transcription start site region 55217	1528 bp upstream
Tssr60081	transcription start site region 60081	1142 bp downstream