rs29609270 SNP Detail

Summary

• ID
  rs29609270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194857360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATGCCATT GAATGAACAC ACTTCCCACA AATGATAAAC
  AAATAAACAC ATTTAATGAT TTTTCAAAGA AAAAGAAAGG CTAGCCTACA AGCTATTACA
  Y
  GATAGGAATT TTCATGAGTC TCTTTTCTCT CTTTACATCT TTCTAGGATC TGGAGTGAAG
  ATCGGAGTAG TGACTAACAC TGAAAATTCT TCTGGAGGAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548226	NES12889024	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609270					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548226	NES12889024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194857360 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cr2	complement receptor 2			Intron
				Noncoding-Transcript-Variant
Rr426767	regulatory region 426767			1548 bp proximal
Rr426768	regulatory region 426768			1702 bp proximal
Rr426769	regulatory region 426769			1820 bp proximal
Tssr384	transcription start site region 384			1607 bp downstream
Tssr385	transcription start site region 385			1635 bp downstream
Tssr15875	transcription start site region 15875			1585 bp downstream
Tssr15876	transcription start site region 15876			1655 bp downstream
Tssr15877	transcription start site region 15877			1720 bp downstream