rs29609268 SNP Detail

Summary

• ID
  rs29609268
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194857671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTATTTA GATGTAAAAG
  GCTTTACACG GATGATTTAG AAATCATTTA GAAGTAGATG GAGGATTTAT ATGTAGAATA
  AAAACAAATC TGAAAAGTTG GTCAGAAGAC AGGAAGTAGG GAAATCATTA TTGAGAATTA
  TCATCAAATG CCTTAATACT GGGTTTCCTG GCTATCTGAT GGATATGGAT GATTTTTTTT
  W
  AAAATGAGAG TCATGTATGT TAACCAAAGT ATTGTACTGA GCATAAAATA TTCATCAGTG
  AACATGAAAT AAGGTCCAGC CATCCCTAGA ATTGATTTTC CAGTAGAAAT TGTAGCAGAA
  CTAATACATA ATATTCAGAC CCTATAACAA CCAGATCCAT CCTTAGCTGC TAACGGCTAC
  CTTAGTGTCA ACAGTCAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548224	NES12889026	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609268					SNP	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548224	NES12889026	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194857671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cr2	complement receptor 2			Intron
				Noncoding-Transcript-Variant
Rr426767	regulatory region 426767			1237 bp proximal
Rr426768	regulatory region 426768			1391 bp proximal
Rr426769	regulatory region 426769			1509 bp proximal
Tssr384	transcription start site region 384			1296 bp downstream
Tssr385	transcription start site region 385			1324 bp downstream
Tssr15875	transcription start site region 15875			1274 bp downstream
Tssr15876	transcription start site region 15876			1344 bp downstream
Tssr15877	transcription start site region 15877			1409 bp downstream