rs29608413 SNP Detail

Summary

• ID
  rs29608413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194858914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGCCCTGG TGGAATTCCC GTATTTGAGC TCCCGTGCCC
  AGCTCACCAA GAACTCCTGG AGTGATGAGA GTGAAGAAAA CCCAGAGCGA ACCCAAGGAT
  Y
  CCATGTGTGC AGCAGTCCAA TGGCAGGTTG CGCTCTGTGA GTTGTGAGCC TGTAGCAAGG
  AGAGGAAGAG GACGGGGCTG GCTGCCTGCG GGGCTGGCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548219	NES12888933	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29608413					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548219	NES12888933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194858914 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cr2	complement receptor 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr426767	regulatory region 426767			within coordinates
Rr426768	regulatory region 426768			148 bp proximal
Rr426769	regulatory region 426769			266 bp proximal
Tssr384	transcription start site region 384			53 bp downstream
Tssr385	transcription start site region 385			81 bp downstream
Tssr15875	transcription start site region 15875			31 bp downstream
Tssr15876	transcription start site region 15876			101 bp downstream
Tssr15877	transcription start site region 15877			166 bp downstream