rs29608411 SNP Detail

Summary

• ID
  rs29608411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194860324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGCTTGAC AAATAGCTTT ACAAACAGAG CCCTGTCAAC
  CTCTTGGAAT TTTGTTGTTT CTTTTGTTGT TAGTTTTTTA TATCTTTGAA CTACACATAG
  Y
  TAGAGTATTT TCTAAAAATG GCTCTTAAAT CATTTGTCTA CTATACAGTA CAGTAACAAA
  TTACCCTATG ATTAGTAGTG GATTAAGCGA GACTAAATAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548217	NES12888885	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29608411					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548217	NES12888885	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194860324 () rs orientation: forward

Symbol	Name	Function Class
Cr2	complement receptor 2	1300 bp upstream
Rr426767	regulatory region 426767	959 bp distal
Rr426768	regulatory region 426768	1241 bp distal
Rr426769	regulatory region 426769	1123 bp distal
Tssr384	transcription start site region 384	1334 bp upstream
Tssr385	transcription start site region 385	1322 bp upstream
Tssr15875	transcription start site region 15875	1370 bp upstream
Tssr15876	transcription start site region 15876	1291 bp upstream
Tssr15877	transcription start site region 15877	1233 bp upstream