rs29604715 SNP Detail

Summary

• ID
  rs29604715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29021605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCTGCA GCTGTGCTCC
  AGCCTGTGCA AGCTAGCAAG CCCACAGTGA GATGCCTGTG GCTCTGGAAC CCCCTCCACT
  TTGGAGCACT CTCCCAAAGT GAATGTCCAG AAGGGGAAGC CCACCTGCTG GGCAGGGTGG
  GAGAAGATTC CCCGCCTTTT CCTCCTGAGA GTGAATGCAG GCCCCCAACA GGGAGGCAGC
  R
  TAGACATCTC TCTTACAAAG ATGCTCTCCA AGTCTCACAG CCTGTGTGTC CTCAGGTCCT
  TCTCTGCAGT TTGCCCTGGA GCCAAGTTCT CTCATCCTAT GACCGTTCTG TTCTCTTCCC
  TGTGCAGGTG CTGAGCTGGG CCAGCGGGTA TCTCCAGGCA GCCTCTGCTA ATGAGCTCTT
  AGCAGGTAAA CAGCTCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47860220	NES11688934	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29604715					SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47860220	NES11688934	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29021605 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3294	predicted gene 3294			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Mir129-1	microRNA 129-1			1013 bp upstream
Rr627477	regulatory region 627477			77 bp distal
Rr627478	regulatory region 627478			1491 bp proximal
Rr627479	regulatory region 627479			1843 bp proximal