rs29603783 SNP Detail

Summary

• ID
  rs29603783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29021508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCTGCA GCCAGGTAAG
  GGAGTCAGGA TCCAGAGATT TCCCCAGGTA CTGTGCTCTG ATGGACCATA CAAAGCTGGA
  AGCAACGGGA GCCAGGGGTC TTCTGCAGCT GTGCTCCAGC CTGTGCAAGC TAGCAAGCCC
  ACAGTGAGAT GCCTGTGGCT CTGGAACCCC CTCCACTTTG GAGCACTCTC CCAAAGTGAA
  Y
  GTCCAGAAGG GGAAGCCCAC CTGCTGGGCA GGGTGGGAGA AGATTCCCCG CCTTTTCCTC
  CTGAGAGTGA ATGCAGGCCC CCAACAGGGA GGCAGCGTAG ACATCTCTCT TACAAAGATG
  CTCTCCAAGT CTCACAGCCT GTGTGTCCTC AGGTCCTTCT CTGCAGTTTG CCCTGGAGCC
  AAGTTCTCTC ATCCTATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47860218	NES11688933	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29603783					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47860218	NES11688933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29021508 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3294	predicted gene 3294			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Mir129-1	microRNA 129-1			1110 bp upstream
Rr627477	regulatory region 627477			within coordinates
Rr627478	regulatory region 627478			1588 bp proximal
Rr627479	regulatory region 627479			1940 bp proximal