rs29603781 SNP Detail

Summary

• ID
  rs29603781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29021332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGGGCA AGGTTCATGT
  GAGAGAGGTA GGGGCTGCCA CACTCAGCTT CCCATGGGAG ACCTTCCCAG CCTGCCTGGT
  GGCCTTAATT CCAAGCCCGT ATGACTCAGA GCAAAGCCAT CGGGAGAATG TGCATCCCTT
  CTCGATCCCT GTCTCCTCCA TCTTGTTTCT TTTGGCACAA GCTGCAGCCA GGTAAGGGAG
  K
  CAGGATCCAG AGATTTCCCC AGGTACTGTG CTCTGATGGA CCATACAAAG CTGGAAGCAA
  CGGGAGCCAG GGGTCTTCTG CAGCTGTGCT CCAGCCTGTG CAAGCTAGCA AGCCCACAGT
  GAGATGCCTG TGGCTCTGGA ACCCCCTCCA CTTTGGAGCA CTCTCCCAAA GTGAATGTCC
  AGAAGGGGAA GCCCACCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47860216	NES11688932	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29603781					SNP	T	T	T	T	T	T	G	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47860216	NES11688932	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29021332 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3294	predicted gene 3294			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Mir129-1	microRNA 129-1			1286 bp upstream
Rr627477	regulatory region 627477			175 bp proximal
Rr627478	regulatory region 627478			1764 bp proximal