rs29602378 SNP Detail

Summary

• ID
  rs29602378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29246906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGACCTC TGCCCTCCAC
  CGCTTTTGGG AAAGAGTCAG TCATTGTGGC TCTGCCTGCC TAGCCCGCAG TCTGCTTGCT
  GACCTCATGG GTTCAGGTGG AGGCTAAGCT GAAGAGGGAC CTTTCACCTG CTTCCTGCCC
  ACTCATTTCC CTGTGGCAGC CACAGGTCCC TACCCTGCAA ACAGATGCCA GTCACATACA
  Y
  ACACTGCCTC CTTGTTGGCC TGGGGGAAAT TAGACAAGAC TGTACTACAC TGTAGGAGTT
  TGTAACCTTC ACTAACCTTA GGGGCTGTAC CAGCATCAAG AACAGGTTGC CTGTGGCTGT
  CCTTGGGAAA AGTGGAGTCT CCCTGAATTT TGAGACTAAT GGAGATAATA TTTAAGGGAG
  CCCTATAGTC TACTTTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47862228	NES11678938	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29602378					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862228	NES11678938	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29246906 () rs orientation: forward

Symbol	Name	Function Class
Rr627532	regulatory region 627532	415 bp distal
Rr627533	regulatory region 627533	within coordinates
Rr627534	regulatory region 627534	263 bp proximal
Tssr55216	transcription start site region 55216	842 bp downstream
Tssr55217	transcription start site region 55217	723 bp downstream
Tssr55218	transcription start site region 55218	1738 bp upstream
Tssr60081	transcription start site region 60081	1106 bp upstream