rs29602374 SNP Detail

Summary

• ID
  rs29602374
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29245984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCAGATT GTGAAAATTA
  AGAGGTGGCT ATGGGCAGTG TAGAAAGCCA CTCTTACATT GCTTGCTGTC TAATAGGCAC
  ATGGTGACAT GACATCAGAA CAGGATGTCG CAGGCCACTC CTGGCACTCA CTCCCTTCCT
  CGTCCCCTCA CCCGTGACCT CAGGTTTCCC AATGCAAAGC ATCAGCATCG CTGCCTTTTA
  M
  GCACTGAGCT CTACTTCCTG TGTGGACAAA TATGATCAGC CTACTCCTGA CGCCGTGCTT
  TCTCACACTG ACATTTCCGT ACCCTTCCCC ACTAGAGACG GACTCTATCC CCGAGAACCT
  GCAAGGCAAG ATAAACCCCG TCTTGAAACA AAAACAAACC CTGCTTAAAA GCAAAGCTGA
  TAGCCTGGTG CAGTGGTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47862224	NES11679042	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29602374					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862224	NES11679042	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29245984 () rs orientation: forward

Symbol	Name	Function Class
Rr627532	regulatory region 627532	within coordinates
Rr627533	regulatory region 627533	674 bp proximal
Rr627534	regulatory region 627534	1185 bp proximal
Tssr55216	transcription start site region 55216	49 bp upstream
Tssr55217	transcription start site region 55217	190 bp upstream
Tssr60081	transcription start site region 60081	184 bp upstream