rs29599132 SNP Detail

Summary

• ID
  rs29599132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108064070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGAGCCA TAAAACCAGT
  GACTTGCCCA GAGAACTCAG AATAGGCTGG CTTCTTTAGG CCCCAAGCCA ACAACCATGA
  GAACTGATTA GCCTACAGCT GGTGACTGAC TCCAGCAGTC ACCATCTCTG AATTCTTAAT
  GAGCGGCAGA CATGACATAC ATCTTCCATC CTCACATCAG CGTTTAAAGC ATCATCTCTA
  R
  GGAAAAGAGG GCACAAGGTG ACGTGACCTT CTCCAGATCA AATACAGCCA GAGCCAATAT
  GAAAACCTCA TTCAGTTTGA ATATAAGGTG TTTTGAATAT AGGATCTTTC CTGGTCCCAT
  GCCTTTCTGG GGCCCTGATG TGGCACTCAG GACAATAGCA CAGATTGATA TAGGACATAG
  AACCCCTTCC AGGGATTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46862400	NES10706875	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		G	A	A	G
ss135585473	ENSMUSSNP5585750	ENSEMBL	ENSEMBL_Sanger	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29599132					SNP	G	G	G	G	G	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46862400	NES10706875	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108064070 () rs orientation: forward

Symbol	Name	Function Class
Gpr61	G protein-coupled receptor 61	1852 bp upstream
Rr583152	regulatory region 583152	1883 bp distal
Rr583153	regulatory region 583153	1717 bp distal
Rr583154	regulatory region 583154	777 bp proximal
Rr583155	regulatory region 583155	1407 bp proximal
Tssr35129	transcription start site region 35129	1846 bp upstream