rs29599129 SNP Detail

Summary

• ID
  rs29599129
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108063754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTTGTA ACCATGGCTG
  TATCCATGAT CTCATTCTGT AGGCCAGGCT AGCCTCCAAC TTACAGAGAT CTGCCTGCCT
  CTCTCTCAAG TGCTGGAATT AAAGGCATGA GCTACTACTA CCTTGCTGGT ACCTGTATTC
  TTGAGGTCAA GACATTGCTC AAAGTCCATA GCCCCACATA GCAGAGCCAT GAGCCTGAAC
  W
  GAGAATGTGG ATCAGATCCG GAGCTGACAC CACGCCTTGT GGGGGACTGA CCTGCATAGC
  CAACAACTCC TTCTGGCTCC AAAAGGGAAT TCTAGAATTG TTTACTAGAT CCAGACAAAG
  AGCCATAAAA CCAGTGACTT GCCCAGAGAA CTCAGAATAG GCTGGCTTCT TTAGGCCCCA
  AGCCAACAAC CATGAGAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss46862397	NES10706873	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs29599129					SNP	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46862397	NES10706873	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108063754 () rs orientation: forward

Symbol	Name	Function Class
Gpr61	G protein-coupled receptor 61	1536 bp upstream
Rr583152	regulatory region 583152	1567 bp distal
Rr583153	regulatory region 583153	1401 bp distal
Rr583154	regulatory region 583154	1093 bp proximal
Rr583155	regulatory region 583155	1723 bp proximal
Tssr35129	transcription start site region 35129	1530 bp upstream