rs29598736 SNP Detail

Summary

• ID
  rs29598736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27790098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAACAG ATGTGGGCAG
  ATATGGGCTC TACAAGAAAA GACAGTGCTG TACAGAGGGG AGAGATACAG CCAGAGAACC
  CAAACCCATC TACCTAAGGA CAGGCTGTCA AATTCCAGGC AGGAATGGTG AGAACAGACT
  GTACACACAT ACTTAATCCA CAGAAGACGT TGAAACTCCA GAGATTGAAA ACAGAAATGG
  Y
  GTTCTTTCTG CATAGCCACT CAAAATCTTA CGCACAAAAT GAACTACTTC CGCGCTGGAA
  TTTTCCTTTT CAATGTCAGT ACCAAGAAAT CTGTGATTTG CATTTTCAAC TAAGATACGG
  GTTCTCCTGT TGGAGTGGAG ATGTTTGCAG ATATGTAAGG ATTCAGAGCG GTGACACATG
  TGACTTGCAA AAAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46861204	NES10863147	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29598736					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861204	NES10863147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27790098 () rs orientation: forward

Symbol	Name	Function Class
Rr574480	regulatory region 574480	295 bp proximal