rs29597228 SNP Detail

Summary

• ID
  rs29597228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29024566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGTCCCTC CCCAAGAGCC GCAGAGCCTG GGGCGAGGTA
  GAGGTAGGTG GGAAAGGATG CTTATATGGG GCGCCCTTCA CTGAGGTTGT TTACAGTTTG
  Y
  TCATCACCCG GAATAAGTCA CCTCTCAAAA TGGGTTTTCT AGGAACACAG CCTGGACATT
  TGACTGCCCC TTGCTCCTCA GTCGAGTACC TGAAGTCTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47860248	NES11688819	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29597228					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47860248	NES11688819	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29024566 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17221	CpG island 17221			96 bp distal
Gm3294	predicted gene 3294			Intron
				Noncoding-Transcript-Variant
Mir129-1	microRNA 129-1			1876 bp downstream
Rr379121	regulatory region 379121			485 bp upstream
Rr627478	regulatory region 627478			within coordinates
Rr627479	regulatory region 627479			1097 bp distal
Rr627480	regulatory region 627480			396 bp distal
Tssr60066	transcription start site region 60066			1611 bp downstream