rs29596250 SNP Detail

Summary

• ID
  rs29596250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29024053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCTCTT TTTACGCCCA
  GGTGCGGGAT GGGTGGGCAA CCCTGGACAA AGAATGGGGT GTCAATCTCA TTGCTAACAA
  AGTCACAGAT CTTGAGAAAC AAAAGCCCCC AGAAGGTTAC CTCCCTGTGC AGAACCACAG
  GAGGCAATTC TAAGGGGATA TGTACGCTGG TGTGTGAGTC TCGCCGAGTT CAAGGGTGGC
  R
  AGGGAGCCTA CGTGGGGCTG CTGGAGTGTG CTGTGGCAGT TCAGGAAGGA GAGCTGAGTT
  CACAGGTCAG AAGGGAGAAC TGCAGGTGTG GGGGGTGAAC GCCACCACCT GGAGACAGGA
  AGACATCGGC GGAGAAGGCA CGACATGGAC AGGCCACATT ACAAGGCTGA CTCATGACCA
  CAGGAGCTCA GGGTCCCGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47860240	NES11688815	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29596250					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47860240	NES11688815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29024053 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17221	CpG island 17221			within coordinates
Gm3294	predicted gene 3294			Intron
				Noncoding-Transcript-Variant
Mir129-1	microRNA 129-1			1363 bp downstream
Rr379121	regulatory region 379121			998 bp upstream
Rr627478	regulatory region 627478			within coordinates
Rr627479	regulatory region 627479			584 bp distal
Rr627480	regulatory region 627480			96 bp proximal