rs29596246 SNP Detail

Summary

• ID
  rs29596246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29023282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTTTAG TCAAAGCCAG
  CGAAGGCCAC TTGGGTAGAT GTTGCTGGCT ATCATGGGCA CACCTCTCAG GGCTGTCACT
  CAATATGCCT AGCCCTCCTT CCTGGCATTG GGTAGACATG AGATCCAAGA CAGGCCTGGC
  TATTGGAATC CTGGGCAGAG GGACCTGTGA CTGGGAACAC CACAGTTGAT CCCAGCAGCC
  R
  AGTGAAGATG GTAAGCCTCT GCGGCAGGAT GAGGTGTCTG CCTGCCGTCC CTTAGCCTGA
  GTCAGTCACC ATGACCCCCT TTCTCCTGTG AGTCACTACT AGTCCTTCAA ATAAAATCCT
  TGACTGCTCA AGTTAACTGA ACGGATATCA TTACTAACCT CTGATTCACC GCCATCTAGA
  GGGAGGAGGG GGGATTGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47860236	NES11688811	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29596246					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47860236	NES11688811	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29023282 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17221	CpG island 17221			726 bp proximal
Gm3294	predicted gene 3294			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Mir129-1	microRNA 129-1			592 bp downstream
Rr379121	regulatory region 379121			1769 bp upstream
Rr627477	regulatory region 627477			1754 bp distal
Rr627478	regulatory region 627478			within coordinates
Rr627479	regulatory region 627479			166 bp proximal
Rr627480	regulatory region 627480			867 bp proximal