rs29595779 SNP Detail

Summary

• ID
  rs29595779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27777060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTGTTGT TCTTCTGTGT
  GAAGACTGTA AAGGAAACAG GGAGAAATTC ACTTCTTGCC ACAGCTGTGC CACTCCTGGT
  AGCAAAATGC TCTAGTCATT TCAGATCTTA AATATTCATA TCACATTGCT CAGGGAAGGA
  GAGTGTCTTC AGACAGACCA GGGCAAAGAG CGTGGAAGTG TCTGTTCCAG AGGTCCGGCT
  Y
  GATACATCCT AGTCTTTGGC TCTGACTATG TTCCATGGCA ATTTCTAAGC CAACAATAGT
  CTTTCTGCTA AATAGGAACA GTGATTCCCT TCCCTATCTC GGCCTACCTG TGAAGTATAG
  CACAGGGCCA AGATTAAACC AGGTTTCCAC TGGAACCAGG GAGACACGAT AGGGAGGAAC
  CTTCTAGAAG AAAACATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46861177	NES10863633	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29595779					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861177	NES10863633	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27777060 () rs orientation: forward

Symbol	Name	Function Class
Rr574477	regulatory region 574477	1300 bp proximal