rs29585109 SNP Detail

Summary

• ID
  rs29585109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127081648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCTGTTG TTCTTCCAGG GATTCTGAGT TCAATTTCCA
  GCAACCACAT GGTAGCTCAT AACCATCTTC TGCATGTAGG TGTACATGCA GACAGAGCAC
  Y
  CCCACATCAA AAACAAAAAA CCTCTTCAAG TGTTCCGGCA ACTTTTAGAG TTTTAATCTG
  AGTTCTGTTA CTCTATTTCA TAGCCACTCT CACACTTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45343552	mCV22836057	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147524200	ENSMUSSNP6538141	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29585109					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127081648 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	1210 bp downstream
Rr564475	regulatory region 564475	349 bp proximal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	Intron
Tssr19997	transcription start site region 19997	1288 bp downstream