rs29582279 SNP Detail

Summary

• ID
  rs29582279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:69761910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAGCCCA TGTTGATAGT
  TAAGAATGTC TTGTCCTACA CGCGGACAAC AAAAAACAGG CTCAGCAGGT TGTGTTTGCA
  TGGTCATGTA TGCATACAGA CATGTGTGTG GCAATAATAA TCAAAGAAAG AGTCGATCAG
  TTCAGAGGAG GGGCTGAAGG GAGGGAAGGG AAAGAGGAAA ATGATGGCAT TCTATTGTAA
  Y
  GTAAAATATA TAAAAATAAA TGAAATTTTA AGAAATGGAG ACCAGCTCAT CTTTAAGAAG
  GAAGTTTAAC AGAGACCACT CTCTTGGCCA GTTCTGCTGC TGTCTTTGTC GTGTCATACA
  CAACATTTTC AATGGGCGAG AGGGATCTTT TCTAACTTAC ATTTGTACAC TTAAGAAAAC
  TAGCGGCAAC AAGACCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39595498	mCV22676840	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss147387937	ENSMUSSNP4118587	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29582279					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69761910 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr540232	regulatory region 540232			1526 bp proximal
Tcf4	transcription factor 4			Intron
				Noncoding-Transcript-Variant