rs29581184 SNP Detail

Summary

• ID
  rs29581184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24714856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACATGAAG GCTCACAACT ATGTGTACAG CTACAGTGTA
  CTCACATACA TAAAATAACT AAATAAATCT TTTAAAAATA GATACTTAAC ATAGTAAAAC
  R
  GCTATTTCCA GCATGTGCAT GCACGTCCCC TCATCAGTTC CCTTCTTGAT CTCTTCTGAG
  ATACCCGCTT CAACTCTACC CATTCCCAGC CCCAGAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45841895	mCV22685925	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss148095145	ENSMUSSNP3905237	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29581184					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24714856 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608340	regulatory region 608340	1247 bp distal
Rr608341	regulatory region 608341	886 bp proximal
Rr608342	regulatory region 608342	959 bp proximal
Rr608343	regulatory region 608343	1139 bp proximal