rs29580118 SNP Detail

Summary

• ID
  rs29580118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166183392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAATTAAA AATGAATAAG ATTCAGGGTT TTTGTGTGTG
  TGTGTGTATG AGGGTTCTCC TTGCATGCGT GTCTGTGTAC TATGTGTATA TATATATATA
  Y
  ACACACACAC ATATATATAT ATGGTGGTGT CTATAGAGAC CAGAAGAGGG TGTCAGATCC
  CCTCCAATCA AAGTTACAGA TGGTTGTGAG CTGCCATTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45341081	mCV22280431	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss148251277	ENSMUSSNP1585413	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29580118					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166183392 () rs orientation: forward

Symbol	Name	Function Class
Rr570220	regulatory region 570220	1827 bp distal
Rr570221	regulatory region 570221	847 bp proximal