rs29579327 SNP Detail

Summary

• ID
  rs29579327
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118406575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGGTGTGA TGGCTCAGCA GTTAAGAGGA CTTGCTGCTT
  CCAGAGGACC TGGGTTTGAT TCTCAGCACC CACACGGTGA CTCACAGCCA TCTGTAAGTC
  S
  ATCGGGTTCC AATACTCTCT TCTACCCTGT ATGTACTAGG CATGAACATG GTAAACCCAC
  ATACATGTAG ACAAAAGACC ATACCGATAA AAATAAATC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45839908	mCV23380117	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	C
ss149162386	ENSMUSSNP2879983	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss321662383	CHEV_5_118718519	CHEVERUD	SCREENING_POP	f	SNP						G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29579327					SNP	C	C	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118406575 () rs orientation: forward

Symbol	Name	Function Class
Gm25076	predicted gene, 25076	1930 bp downstream
Gm73266	predicted gene, 73266	733 bp upstream
Rr618847	regulatory region 618847	1997 bp distal
Rr618848	regulatory region 618848	315 bp proximal
Rr618849	regulatory region 618849	684 bp proximal
Rr618850	regulatory region 618850	755 bp proximal