rs29576851 SNP Detail

Summary

• ID
  rs29576851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152660775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCAAAAA CGTATGTGTT
  AGCCAGGCAC ATTTTGTGAT CCCAGGACTT TCCAGGCAGG AGGATTGCAG TAAGTTTCAA
  GTTAGTTTGG ACTACAGAGT GAGACTGTCT CAAAACAAAA CCAAAACCCC CAGACCTTTT
  GTGTTGAAGA CATGGTCCCT AATGCAACAG TGTTCTGACG CAGGATCTTC AGGAAGGTAA
  Y
  TGGATGCACT CCGAGTGCAG GGCAGTCAAG CGTTTACTGA CTGACTGGGC TCAAACCATT
  TTATTCAGAG GCTTGAAAGG TCTGCTCAAC CTGCTAGCCC CGGCATGGCA AATATTCCAG
  ACCTCTTCTC ATCATTAAAG AGCAAATTCG TAACTTAATG GGCTTTGGGC AATAGGAAGC
  AAATCACTAG GGGCACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45340664	mCV27575764	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss147974930	ENSMUSSNP2757491	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29576851					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152660775 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			658 bp distal
Rr374094	regulatory region 374094			835 bp upstream
Rr567481	regulatory region 567481			within coordinates
Rr567482	regulatory region 567482			882 bp proximal