rs29576558 SNP Detail

Summary

• ID
  rs29576558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127599368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAGAGGAT CGCAGACTCA CCATCTGCTC CCTGAAGCGA
  GCCAGGCTCT ATTTTGAGCA CAGTGAAGTG TGGTGAATCA ATGGGGGCTG CGGACTGAAC
  R
  TTCTCAGCAC ACAGCCCAGG CAAACTCCTT TTAAAACATG AATTCTCTGG GTCATTTCCT
  TCTCATTAGG GGAGCATGTG AGCTGTTTTC CCATGCTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45342821	mCV22279979	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss147540763	ENSMUSSNP3113062	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29576558					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127599368 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	within coordinates
Rr564597	regulatory region 564597	1863 bp proximal
Tssr26143	transcription start site region 26143	1730 bp upstream