rs29576300 SNP Detail

Summary

• ID
  rs29576300
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92163832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTTCTG ACTTCAGAGC
  TCCCACTGAC CTTCTTGTAG GTAGGCTGAC ATAAGGAATC AAGTAGAGGC CTGATCACAG
  GATTACTAAG CCTGTGTATA TGGCATTCTC AAGTCTTGAT AGATTTCCTC AAAGGTTATG
  ACCATATTCA CTTACTGAAG ATACGTAAAT GAACTCTAGG GATGTAGCTC AGTGGTGGAG
  M
  TCTGGCTCTG CATGTACAAG GACCTGGGCT TCATCTCTTA TACCACAAAA AAAAAAAAAA
  AAAAAAAGGG TCAGGTGCCA GCTACTTTGC AGCTCATGGC ATTTGTATAT AAAAGATGAG
  AAAACCATCA AAGCCTCAGT TTCTGCATTT GGATCAGGCA TTGAGGCTGT GCTTCAGGGA
  AGGAAGCATG GCAGACTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45339369	mCV23291781	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss146930954	ENSMUSSNP963699	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29576300					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92163832 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Phf21a	PHD finger protein 21A			Intron
				Noncoding-Transcript-Variant
Rr560895	regulatory region 560895			1785 bp distal
Rr560896	regulatory region 560896			1847 bp distal