rs29575311 SNP Detail

Summary

• ID
  rs29575311
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127968084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAGCTGGT TGGAGCTCTG CGGTCCTTGC CATCGTCGCC
  GTCACCGGAT TCCTGCAGCC GCTCTGCGAG CTGTGTTCCA CTTGGATTCA CACCACCTCC
  S
  CTGCTCCCGC CGCCACCGCC TCGGCGCCCT TCCCCTGGCC CTCGTCCACC CAATGTCTGA
  CTCTGATTCT CGGACTGAGA AACGCAAGGT AAACACTCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45341821	mCV22674671	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss147552367	ENSMUSSNP5271208	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29575311					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127968084 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l11	BCL2 like 11			mRNA-UTR
				Noncoding-Transcript-Variant
Gm74510	predicted gene, 74510			53 bp upstream
Gm75592	predicted gene, 75592			1 bp upstream
Gm75596	predicted gene, 75596			1721 bp downstream
Rr397296	regulatory region 397296			1169 bp upstream
Rr564648	regulatory region 564648			1617 bp distal
Rr564651	regulatory region 564651			104 bp distal
Rr564652	regulatory region 564652			within coordinates
Rr564653	regulatory region 564653			64 bp proximal
Rr564654	regulatory region 564654			1849 bp proximal
Rr564655	regulatory region 564655			1858 bp proximal
Tssr20042	transcription start site region 20042			108 bp downstream
Tssr20043	transcription start site region 20043			1394 bp upstream
Tssr20044	transcription start site region 20044			1423 bp upstream
Tssr20045	transcription start site region 20045			1947 bp upstream
Tssr20046	transcription start site region 20046			1961 bp upstream
Tssr26150	transcription start site region 26150			1236 bp downstream
Tssr26151	transcription start site region 26151			1860 bp downstream