rs29574594 SNP Detail

Summary

• ID
  rs29574594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109504153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATAACAA CTGGTTTACA
  TTACATTCAT TCTCGGCTCC TCTGCTTCGC TGCGTAAGCT AAGCTGAGGG TAGGCAAAGG
  AAGACTCTAG TGAAGAGATA CCTGGAGCTA GCGCCTCCCT ATGTTGGGGG ATATGGTTAA
  CTCTGGACTT ACAGCTCATT TCTAGAGATT TCCGGACATC TGCCTAGGAT CTCAGCCTAA
  R
  GGCCTTGCCC TTCCCCCACT GCACCCCTCC CCCACCGCAT CCGCCTTTCA AGAGATTATT
  TTTACACGCC CGCGCACACG CGCACACACA TACGGGGGGA GGAGGTTTAT TTTATTGTGA
  CTCTTCTTGA AGTTCATCTC TTTCCTTCCA ACTTACTTTC CTCCAACACG TGACCTCTCC
  ACTTCCCAGC CTGCGCAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45340237	mCV23782085	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147203226	ENSMUSSNP4561245	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29574594					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109504153 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	892 bp upstream
Gm20638	predicted gene 20638	within coordinates
Gm45346	predicted gene 45346	within coordinates
Rr562477	regulatory region 562477	402 bp proximal
Rr562478	regulatory region 562478	903 bp proximal
Rr562479	regulatory region 562479	1196 bp proximal
Rr562480	regulatory region 562480	1599 bp proximal