rs29571136 SNP Detail

Summary

• ID
  rs29571136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127305425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGACTGG GATGTGTTTC GCACACAGAG GAGCGTGTGG
  AAGACTGGAA GATAGCAGTA CTGGGTGACC TAGAAGGTGC CAGAGGCTCC GCTTCAGCCA
  Y
  AAACATACCC TGCTTCCCAG ACATATCACC TACCCCAAGA TCCCCTCTGT GTCATATGGG
  AAGGGTCCAC AGGCAAGTGA CAGTCATAGG AGGCGGTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45339126	mCV25209051	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147530694	ENSMUSSNP6700700	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29571136					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127305425 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnip3	Kv channel interacting protein 3, calsenilin			Intron
				Noncoding-Transcript-Variant
Rr564528	regulatory region 564528			724 bp distal
Rr564529	regulatory region 564529			1018 bp distal
Tssr20021	transcription start site region 20021			511 bp downstream