rs29570389 SNP Detail

Summary

• ID
  rs29570389
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165345810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGACCT GGCACAGGGT
  GTGTGTGTGT GTGTTTGTGT GTGTACACTG GGCAGGCCAG TGAAGGGTGG GCCACAGTGA
  CTGTGGAAAC TATTTGTAGA GTGACAGTTT CTCCGGGGAA ACTTGAAGTA AGTTCCTTTG
  TGGGGCAGCA GGGCCGCCAC AGCATTGGCT GTCGGGCGGT ACCGGGCTAC CCTCCGTCCC
  K
  CCCCCCAGGC TCAGACCGGG CTGGCCAACG TGGCGGAGGG AGAGCGCAGG CCCCAGCTCT
  GGGGAAAGTT TGTCCGCCAC TGCTACAGCG GGGATTTGAC CAGGACACGC GGGACCCAGA
  GCCCAGCCCT GCCGCCCAGC GCTACTCGCT AGCTATGGGT AAGTCGCGGC CACGGATCTC
  GATCCACCCC TCCCCTCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45339792	mCV22598481	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss148240509	ENSMUSSNP6563501	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29570389					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165345810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12710	CpG island 12710	within coordinates
Rr569936	regulatory region 569936	93 bp distal
Rr569937	regulatory region 569937	within coordinates
Slc2a10	solute carrier family 2 (facilitated glucose transporter), member 10	mRNA-UTR
Tssr21725	transcription start site region 21725	4 bp upstream