rs29569596 SNP Detail

Summary

• ID
  rs29569596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19526839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCG TAATTCATGA CATTGGCCAC
  Y
  ATTGTATATT CTATAATTAG AAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39092082	mCV23260070	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148743633	ENSMUSSNP2036932	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss324278106	CHEV_13_19434538	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29569596					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19526839 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1889 bp upstream
Trgj4	T cell receptor gamma joining 4	457 bp downstream
Tssr118539	transcription start site region 118539	971 bp downstream
Tssr118540	transcription start site region 118540	898 bp downstream
Tssr118541	transcription start site region 118541	842 bp downstream
Tssr118542	transcription start site region 118542	764 bp downstream
Tssr118543	transcription start site region 118543	728 bp downstream
Tssr118544	transcription start site region 118544	708 bp downstream
Tssr118545	transcription start site region 118545	682 bp downstream
Tssr118546	transcription start site region 118546	600 bp downstream
Tssr118547	transcription start site region 118547	527 bp downstream
Tssr118548	transcription start site region 118548	508 bp downstream
Tssr118549	transcription start site region 118549	58 bp upstream
Tssr118550	transcription start site region 118550	773 bp upstream
Tssr118551	transcription start site region 118551	1531 bp upstream
Tssr121588	transcription start site region 121588	960 bp upstream
Tssr121589	transcription start site region 121589	589 bp downstream
Tssr121590	transcription start site region 121590	1655 bp downstream