rs29568856 SNP Detail

Summary

• ID
  rs29568856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:104220478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTCAGCA GCTTCTTCAA GAGATTGGAT TGGACTAATG
  GTGATCCATT ATCCCCGTTA TGTACAAAGC TGCCTGCCCC AGAACACTAG GAATAGTGAA
  R
  CCAACCTCTG CGTTCTTATG TATAAGCAAC ATTCTGAGTA CTGAGTGTGG GGGAGGGTGA
  GAAAGGGGTG AGGAGGGGAG GAGGGAGGGA TATGGAGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45837274	mCV24989733	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29568856					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104220478 () rs orientation: forward

Symbol	Name	Function Class
Gm43333	predicted gene 43333	287 bp upstream
Rr616028	regulatory region 616028	within coordinates
Rr616029	regulatory region 616029	1116 bp proximal
Rr616030	regulatory region 616030	1718 bp proximal
Rr616031	regulatory region 616031	1972 bp proximal
Scpppq1	secretory calcium-binding phosphoprotein proline-glutamine rich 1	Intron
Tssr52189	transcription start site region 52189	299 bp downstream