rs29559841 SNP Detail

Summary

• ID
  rs29559841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92673960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGACAG CTAGGGCTAT
  ACAGAGAAAC CCTATCTCGA AAAACCAAAA CAAACAAACA AACAAATAAA CAAAACAACT
  ACATCTCTTA CAAACAGCAG AAAATCTATT TCTTACAGCG CCCAAGGCTG GGAGTTCTAA
  GATGAAGGTG GCAGCAGGTT TTTTAACCCA GTGATGGCCC AGTTTCTGGT TCATAGCTGG
  Y
  GCGTGCTTCT GTGCCTCCAT ATAGTGGAAG GGGCTAGCTA ACTTTCTAAG ACATCTATTA
  TAAGGTCACT ATTCCTCATG ACCTCTGTCA TCGTGACCTA TCACCATCCA AAGGTTTGAT
  CTCCCAGAAC CATCACTTTG GGGGTGAGCA GGGGATTAAG ACTTCAGCAT GTTAATGGGG
  CAGGACACAC AACCGTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45835593	mCV23636409	ABI	CRAMUS_MOUSE	f	SNP	C		T
ss148834268	ENSMUSSNP2260959	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29559841					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92673960 () rs orientation: forward

Symbol	Name	Function Class
Rr614656	regulatory region 614656	834 bp distal